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geneious mapper  (Biomatters Ltd)

 
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    Biomatters Ltd geneious mapper
    Geneious Mapper, supplied by Biomatters Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/geneious+mapper/0+6+geneious+program/pmc12486443-39-5-10
    Average 86 stars, based on 1 article reviews
    geneious mapper - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Sequencing:

    Article Title: Genomic surveillance of STEC/EHEC infections in Germany 2020 to 2022 permits insight into virulence gene profiles and novel O-antigen gene clusters.
    Article Snippet: .. In parallel serotype and virulence genes of interest were called by mapping against the respective reference sequence using standard Geneious mapper (settings: medium sensitivity; none finetuning, trim sequences before mapping; at least Geneious prime version 2021.2.2; Biomatters Ltd.). ..

    Mutagenesis:

    Article Title: Overexpression of the UDP-glycosyltransferase UGT34A23 confers resistance to the diamide insecticide chlorantraniliprole in the tomato leafminer, Tuta absoluta.
    Article Snippet: .. To investigate the role of target-site mutation in the resistance of the Sus, Ssus, Mur and Sres strains to chlorantraniliprole the RNAseq data generated for each strain was mapped to the gene encoding the RyR, the chlorantraniliprole target-site, using Geneious mapper with default parameters (Geneious v10.2.6, Biomatters Ltd.) Alignments were manually checked for the presence of mutations and indels. .. The candidate resistance gene, UGT34A23, identified from transcriptome profiling (see results below) was synthesised (Twist Bioscience) and cloned into the pUASTattB plasmid (GenBank: EF362409.1).

    RNA sequencing:

    Article Title: Overexpression of the UDP-glycosyltransferase UGT34A23 confers resistance to the diamide insecticide chlorantraniliprole in the tomato leafminer, Tuta absoluta.
    Article Snippet: .. To investigate the role of target-site mutation in the resistance of the Sus, Ssus, Mur and Sres strains to chlorantraniliprole the RNAseq data generated for each strain was mapped to the gene encoding the RyR, the chlorantraniliprole target-site, using Geneious mapper with default parameters (Geneious v10.2.6, Biomatters Ltd.) Alignments were manually checked for the presence of mutations and indels. .. The candidate resistance gene, UGT34A23, identified from transcriptome profiling (see results below) was synthesised (Twist Bioscience) and cloned into the pUASTattB plasmid (GenBank: EF362409.1).

    Generated:

    Article Title: Overexpression of the UDP-glycosyltransferase UGT34A23 confers resistance to the diamide insecticide chlorantraniliprole in the tomato leafminer, Tuta absoluta.
    Article Snippet: .. To investigate the role of target-site mutation in the resistance of the Sus, Ssus, Mur and Sres strains to chlorantraniliprole the RNAseq data generated for each strain was mapped to the gene encoding the RyR, the chlorantraniliprole target-site, using Geneious mapper with default parameters (Geneious v10.2.6, Biomatters Ltd.) Alignments were manually checked for the presence of mutations and indels. .. The candidate resistance gene, UGT34A23, identified from transcriptome profiling (see results below) was synthesised (Twist Bioscience) and cloned into the pUASTattB plasmid (GenBank: EF362409.1).



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    Genetic map of linear plasmid p19Msa1099_9 (GenBank accession number CP079956.2 ). Arrows show the position and orientation of predicted coding regions. The predicted genes are color-coded according to the legend. The sequences of physical ends of the hairpin plasmid are shown below the gene map. The mapping of sequencing reads longer than 10 kb to the assembled plasmid sequence revealed a centrally symmetric alignment of reads to the covalently closed ends of the hairpin plasmid. These reads resulted from the unfolding of the terminal hairpin structure during Oxford Nanopore sequencing technology (ONT) as it passed through the nanopore, and therefore, the unmapped parts correspond to the complementary strand (highlighted by a red dotted line). The mean coverage calculated from all ONT reads by <t>Geneious</t> mapper was 881× with a standard deviation of 215.
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    geneious mapper  (Biotechnology Information)
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    Genetic map of linear plasmid p19Msa1099_9 (GenBank accession number CP079956.2 ). Arrows show the position and orientation of predicted coding regions. The predicted genes are color-coded according to the legend. The sequences of physical ends of the hairpin plasmid are shown below the gene map. The mapping of sequencing reads longer than 10 kb to the assembled plasmid sequence revealed a centrally symmetric alignment of reads to the covalently closed ends of the hairpin plasmid. These reads resulted from the unfolding of the terminal hairpin structure during Oxford Nanopore sequencing technology (ONT) as it passed through the nanopore, and therefore, the unmapped parts correspond to the complementary strand (highlighted by a red dotted line). The mean coverage calculated from all ONT reads by <t>Geneious</t> mapper was 881× with a standard deviation of 215.
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    Image Search Results


    Genetic map of linear plasmid p19Msa1099_9 (GenBank accession number CP079956.2 ). Arrows show the position and orientation of predicted coding regions. The predicted genes are color-coded according to the legend. The sequences of physical ends of the hairpin plasmid are shown below the gene map. The mapping of sequencing reads longer than 10 kb to the assembled plasmid sequence revealed a centrally symmetric alignment of reads to the covalently closed ends of the hairpin plasmid. These reads resulted from the unfolding of the terminal hairpin structure during Oxford Nanopore sequencing technology (ONT) as it passed through the nanopore, and therefore, the unmapped parts correspond to the complementary strand (highlighted by a red dotted line). The mean coverage calculated from all ONT reads by Geneious mapper was 881× with a standard deviation of 215.

    Journal: Applied and Environmental Microbiology

    Article Title: Evidence of in vitro mecB -mediated β-lactam antibiotic resistance transfer to Staphylococcus aureus from Macrococcus psychrotolerans sp. nov., a psychrophilic bacterium from food-producing animals and human clinical specimens

    doi: 10.1128/aem.01652-24

    Figure Lengend Snippet: Genetic map of linear plasmid p19Msa1099_9 (GenBank accession number CP079956.2 ). Arrows show the position and orientation of predicted coding regions. The predicted genes are color-coded according to the legend. The sequences of physical ends of the hairpin plasmid are shown below the gene map. The mapping of sequencing reads longer than 10 kb to the assembled plasmid sequence revealed a centrally symmetric alignment of reads to the covalently closed ends of the hairpin plasmid. These reads resulted from the unfolding of the terminal hairpin structure during Oxford Nanopore sequencing technology (ONT) as it passed through the nanopore, and therefore, the unmapped parts correspond to the complementary strand (highlighted by a red dotted line). The mean coverage calculated from all ONT reads by Geneious mapper was 881× with a standard deviation of 215.

    Article Snippet: Long sequencing reads were mapped to the reference chromosomal and plasmid sequences using the built-in Geneious Mapper (Minimum mapping quality: 10) in Geneious Prime v2024.0.5 (GraphPad Software, New Zealand).

    Techniques: Plasmid Preparation, Sequencing, Nanopore Sequencing, Standard Deviation